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Bug
Null pointer exception thrown when editing a sparql query page in Page Management
Unassigned
Tim Worrall
Blocker
Fixed
Jan 7, 2013
Jan 7, 2013
Bug
Data properties that have their display level set to "self-authentication" cannot be updated by self-editor
Unassigned
Tim Worrall
Blocker
Fixed
Dec 12, 2012
Jun 19, 2013
Bug
modTime statements for individuals sometimes appearing in the asserted TBox graph
Unassigned
BrianL
Blocker
Fixed
Dec 11, 2012
Jun 19, 2013
Bug
Possible lock contention and/or deadlock situation with inference recomputation and simultaneous login events
Unassigned
BrianL
Blocker
Referred to Development
Dec 11, 2012
Jul 14, 2013
Bug
SimpleReasoner missing inverse property updates with incremental deletion
Unassigned
Chris Westling (no longer at Cornell)
Blocker
Referred to Development
Nov 28, 2012
Jul 14, 2013
Task
Clear up references to the Application Bean
Unassigned
Jim Blake
Major
Fixed
Nov 8, 2012
Nov 15, 2012
Improvement
Improve the integration of external concepts into VIVO
Unassigned
Jon Corson-Rikert
Blocker
Referred to Development
Nov 6, 2012
Jul 14, 2013
Improvement
Show Examples of Statements Using this Property needs to look at more graphs than KB-2
Unassigned
Jon Corson-Rikert
Blocker
Fixed
Nov 6, 2012
Jul 14, 2013
Bug
Change the URL that linked data is served from to allow it to be blocked in robots.txt
Unassigned
Brian Caruso
Blocker
Fixed
Nov 2, 2012
Nov 2, 2012
Bug
FileServingServlet failed to save file
Unassigned
Brian Caruso
Blocker
Fixed
Nov 2, 2012
Nov 14, 2012
Bug
NPE in IndividualRequestAnalysisContextImpl
Unassigned
Brian Caruso
Blocker
Duplicate
Nov 2, 2012
Nov 15, 2012
Bug
Under collated sort for an object property, limit classes displayed to those in class groups (eliminating institutional internal class)
Unassigned
Jon Corson-Rikert
Blocker
Duplicate
Oct 31, 2012
Jul 14, 2013
Bug
Exception when selecting the manage web page icon
Unassigned
Stella Mitchell (account no longer used)
Blocker
Reviewed for Pending Action
Oct 25, 2012
Jun 19, 2013
Bug
Application allows adding an ontology that results in any query from SPARQL query page getting a syntax exception
Unassigned
Stella Mitchell (account no longer used)
Critical
Referred to Development
Oct 23, 2012
Jul 15, 2013
Bug
Exception when adding a type to an individual
Unassigned
Stella Mitchell (account no longer used)
Blocker
Referred to Development
Oct 23, 2012
Jul 14, 2013
Improvement
Investigate and document in this issue what happens to an object property when you delete a class that had that object property as a 1) domain and/or 2) range
Unassigned
Jon Corson-Rikert
Critical
Referred to Development
Oct 23, 2012
Jul 15, 2013
New Development
create application ontology snippet for indicating which is the default profile type for an individual
Unassigned
Stella Mitchell (account no longer used)
Blocker
Fixed
Oct 19, 2012
Jul 14, 2013
Improvement
Add a startup smoke test to check that Tomcat is configured for UTF-8
Unassigned
Jim Blake
Major
Won't Fix
Oct 18, 2012
Oct 25, 2012
Improvement
Add a startup smoke test for UTF8 character set in the database.
Unassigned
Jim Blake
Major
Fixed
Oct 17, 2012
Oct 18, 2012
Improvement
Add a startup smoke test for a valid default namespace -- ends in "/individual/"
Unassigned
Jim Blake
Major
Fixed
Oct 17, 2012
Oct 17, 2012
Task
Clean up references to NavigationController in web.xml
Unassigned
Jim Blake
Minor
Fixed
Oct 12, 2012
May 7, 2013
Improvement
Remove our local customizations of the Selenium IDE
Unassigned
Jim Blake
Major
Fixed
Oct 9, 2012
Oct 18, 2012
Improvement
Set menu pages to sort by class display rank
Unassigned
Tim Worrall
Major
Fixed
Oct 8, 2012
Oct 8, 2012
Improvement
The root user account specified by rootUser.emailAddress should always exist. If it doesn't, it should be created.
Unassigned
Jim Blake
Major
Fixed
Oct 8, 2012
Oct 15, 2012
Improvement
VIVO should always create the root account that is specified in deploy.properties
Unassigned
Jim Blake
Major
Fixed
Oct 5, 2012
Oct 15, 2012
Bug
Indexer Null Pointer exceptions thrown
Unassigned
Joseph Mc Enerney
Blocker
Fixed
Oct 5, 2012
Oct 9, 2012
Sub-task
no search results when no document matches all query terms
Unassigned
Jim Blake
Blocker
Fixed
Oct 4, 2012
Oct 5, 2012
Sub-task
no search results - query contains stop words
Unassigned
Jim Blake
Blocker
Fixed
Oct 4, 2012
Oct 5, 2012
Bug
Search returns no results unless all words are found
Unassigned
Jon Corson-Rikert
Blocker
Fixed
Oct 3, 2012
Oct 5, 2012
Bug
OCRE ontology takes forever to delete
Unassigned
BrianL
Blocker
Referred to Development
Oct 2, 2012
Jul 14, 2013
Bug
Exception while reconciling the current and recomputed ABox inference model for class subsumption inferences. Halting processing.
Unassigned
Joseph Mc Enerney
Blocker
Fixed
Oct 1, 2012
Oct 5, 2012
Improvement
Incorporate additional OpenSocial refinements for 1.5.1
Unassigned
Jim Blake
Blocker
Fixed
Sep 28, 2012
Oct 1, 2012
Bug
Get error after selecting to delete an Individual
Unassigned
Holly Mistlebauer
Blocker
Fixed
Sep 28, 2012
Oct 1, 2012
Bug
404 page when clicking on "Page Management" under "Site Configuration" on the VIVO Site Administration Page
Unassigned
Yindalon Aphinyanaphongs
Major
Fixed
Sep 28, 2012
Oct 3, 2012
Bug
Restriction axioms in filegraphs multiply mysteriously when using Sesame endpoint for VIVO store
Unassigned
BrianL
Blocker
Fixed
Sep 27, 2012
Sep 27, 2012
Bug
Confirm what happens if a search index is kicked off when VIVO can't communicate with Solr
Unassigned
Jon Corson-Rikert
Blocker
Fixed
Sep 24, 2012
Sep 26, 2012
Bug
Prefix collision in RDF upload
Unassigned
Joseph Mc Enerney
Blocker
Fixed
Sep 21, 2012
Sep 26, 2012
Bug
After 22 hrs of recomputing inferences "Updating ABox inference model" threw these exceptions
Unassigned
Joseph Mc Enerney
Blocker
Fixed
Sep 21, 2012
Sep 28, 2012
Bug
When no inferred triples available stack trace dumped to user interface
Unassigned
Joseph Mc Enerney
Blocker
Fixed
Sep 19, 2012
Oct 3, 2012
Bug
Large bulk ingest hits out of memory error unless search indexing is disabled
Unassigned
BrianL
Blocker
Fixed
Sep 18, 2012
Oct 9, 2012
Task
Drop Vitro properties bannerHeight, bannerImage, bannerWidth
Unassigned
Jon Corson-Rikert
Critical
Referred to Development
Sep 17, 2012
Jul 15, 2013
Bug
Retraction of dc:creator inferences does not work in batch mode
Unassigned
BrianL
Blocker
Fixed
Sep 17, 2012
Sep 21, 2012
Bug
Duplicate label editing not working on http://bailey.mannlib.cornell.edu:9090/vclone
Unassigned
Jon Corson-Rikert
Blocker
Table
Sep 17, 2012
Sep 25, 2012
Bug
Collation by subclass seems to miss grouping some publications with others in the same subclass
Unassigned
Jon Corson-Rikert
Blocker
Won't Fix
Sep 16, 2012
Sep 21, 2012
Bug
Property hierarchy should indicate X subproperties, not X subclasses when there are child properties
Unassigned
Jon Corson-Rikert
Blocker
Fixed
Sep 16, 2012
Oct 1, 2012
Bug
classes are not sorted in back-end DWR editing
Unassigned
Jon Corson-Rikert
Critical
Fixed
Sep 14, 2012
Sep 21, 2012
Bug
Null pointer exception when trying to load a graph from manage models page
Unassigned
Joseph Mc Enerney
Blocker
Fixed
Sep 14, 2012
Sep 14, 2012
Bug
Changing the URI of a class causes exception
Unassigned
Jon Corson-Rikert
Blocker
Fixed
Sep 13, 2012
Sep 14, 2012
Task
When an institutional internal class is defined, ignore it when collating by subtype
Unassigned
Jon Corson-Rikert
Blocker
Cannot Reproduce
Sep 13, 2012
Sep 27, 2012
Bug
"All Data Properties" page is blank, at least with VIVO Cornell data
Unassigned
BrianL
Blocker
Fixed
Sep 13, 2012
Sep 19, 2012
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